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Virulence Characteristics and Antimicrobial Resistance Profiles of Shiga Toxin-Producing Escherichia coli Isolates from Humans in South Africa: 2006–2013

201937 citationsOpen accessKafr el-Sheikh University

In plain language

A study of 38 Shiga toxin-producing Escherichia coli (STEC) isolates implicated in human illness between 2006 and 2013 in South Africa evaluated their serotypes, virulence genes, drug resistance, and genetic relatedness. The isolates comprised 11 distinct O:H serotypes, dominated by non-O157 strains including O26:H11 (24 percent), O111:H8 (16 percent), and O117:H7 (13 percent), alongside O157:H7 (13 percent). Most strains carried critical virulence genes such as stx1, eaeA, and ehxA, with fewer harbouring stx2. Furthermore, 89 percent of the isolates showed multidrug resistance. Genetic profiling using pulsed-field gel electrophoresis identified 34 profiles grouping into eight clusters with at least 80 percent similarity within serotypes, regardless of collection year. Overall, the findings demonstrate that South African human infections predominantly involved multidrug-resistant, non-O157 strains carrying typical virulence factors, pointing to a need for stronger national monitoring and surveillance programmes.

Key takeaways

  • Non-O157 strains predominated among the analysed isolates, with O26:H11 being the most common serotype at 24 percent.
  • Multidrug resistance was identified in 89 percent of the examined human clinical isolates.
  • Most isolates possessed key virulence genes including stx1, ehxA, and eaeA, while stx2 was present in 29 percent of strains.
  • Pulsed-field gel electrophoresis revealed 34 genetic profiles forming eight clusters with 80 percent or greater intra-serotype similarity across different years.

Why it matters

Shiga toxin-producing Escherichia coli can trigger mild to severe illness in humans. By revealing that most local cases involved non-O157 strains rather than classic O157 strains, and that nearly nine in ten were multidrug-resistant, this work highlights the need for public health systems to track a wider range of bacterial strains and maintain alert surveillance frameworks to effectively identify and manage outbreaks.

Commercialisation angle

The abstract points to a public health need for improved monitoring and surveillance programmes rather than a commercial product. The data could inform diagnostic developers seeking targets for multi-strain STEC assays or surveillance tools capable of identifying non-O157 serotypes and resistance profiles. However, as descriptive epidemiological research analysing historical bacterial isolates, this work remains at an early diagnostic research stage, and the abstract indicates no direct commercialisation pathway.

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Abstract

Shiga toxin-producing <i>Escherichia coli</i> (STEC) isolates (N = 38) that were incriminated in human disease from 2006 to 2013 in South Africa were characterized by serotype, virulence-associated genes, antimicrobial resistance and pulsed-field gel electrophoresis (PFGE). The isolates belonged to 11 O:H serotypes. STEC O26:H11 (24%) was the most frequent serotype associated with human disease, followed by O111:H8 (16%), O157:H7 (13%) and O117:H7 (13%). The majority of isolates were positive for key virulence-associated genes including <i>stx1</i> (84%), <i>eaeA</i> (61%), <i>ehxA</i> (68.4%) and <i>espP</i> (55%), but lacked <i>stx2</i> (29%), <i>katP</i> (42%), <i>etpD</i> (16%), <i>saa</i> (16%) and <i>subA</i> (3%). <i>stx2</i> positive isolates carried <i>stx2c</i> (26%) and/or <i>stx2d</i> (26%) subtypes<b>.</b> All pathogenicity island encoded virulence marker genes were detected in all (100%) isolates except <i>nleA</i> (47%), <i>nleC</i> (84%) and <i>nleD</i> (76%). Multidrug resistance was observed in 89% of isolates. PFGE revealed 34 profiles with eight distinct clusters that shared ≥80% intra-serotype similarity, regardless of the year of isolation. In conclusion, STEC isolates that were implicated in human disease between 2006 and 2013 in South Africa were mainly non-O157 strains which possessed virulence genes and markers commonly associated with STEC strains that have been incriminated in mild to severe human disease worldwide. Improved STEC monitoring and surveillance programs are needed in South Africa to control and prevent STEC disease in humans.

Research topics

  • Escherichia coli research studies
  • Viral gastroenteritis research and epidemiology
  • Salmonella and Campylobacter epidemiology

Sustainable Development Goals

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DOI: 10.3390/toxins11070424

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