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article · Frontiers in Digital Health

Synthetic data generation: a privacy-preserving approach to accelerate rare disease research

202528 citationsOpen accessNile University

In plain language

Research into rare diseases is heavily constrained by small patient populations, stringent privacy rules, and an urgent demand for diverse datasets to build artificial intelligence tools for diagnosis and therapy. Synthetic data, which consists of artificially generated datasets that mirror patient attributes whilst safeguarding personal confidentiality, offers a practical way to overcome these data shortages. Evidence from case studies demonstrates that synthetic datasets can accurately replicate real patient characteristics, support predictive modelling, and ensure adherence to international privacy standards such as GDPR and HIPAA. In addition, these artificial datasets facilitate clinical trial simulations, artificial intelligence model training, and cross-border research collaborations. Although current technical limitations persist, synthetic data generation significantly enhances data accessibility, creating new opportunities to accelerate the global diagnosis, management, and treatment of rare medical conditions.

Key takeaways

  • Rare disease research faces severe obstacles due to small patient cohorts, strict privacy rules, and data scarcity for artificial intelligence training.
  • Synthetic datasets can realistically replicate patient characteristics whilst complying with regulations such as GDPR and HIPAA.
  • Case studies show synthetic data successfully supporting predictive modelling, clinical trial simulation, and cross-border collaboration.
  • Despite current limitations, synthetic data provides a privacy-preserving mechanism to advance the diagnosis and treatment of rare diseases.

Why it matters

Rare diseases affect relatively few individuals, making it difficult to gather enough medical information to build effective diagnostic tools. By generating privacy-compliant artificial data that mimics real health records, researchers can safely share information across borders and train healthcare algorithms without compromising patient confidentiality, ultimately speeding up the development of targeted therapies.

Commercialisation angle

The work enables the development of artificial intelligence diagnostics, therapy discovery, and simulated clinical trials. Likely adopters include healthcare software developers, pharmaceutical organisations, and clinical researchers requiring regulatory-compliant datasets under GDPR and HIPAA. Because the findings rely on case studies while noting ongoing limitations, the approach is applied and tested in specific contexts rather than being an off-the-shelf product ready for widespread commercial rollout.

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Abstract

Rare disease research faces significant challenges due to limited patient data, strict privacy regulations, and the need for diverse datasets to develop accurate AI-driven diagnostics and treatments. Synthetic data-artificially generated datasets that mimic patient data while preserving privacy-offer a promising solution to these issues. This article explores how synthetic data can bridge data gaps, enabling the training of AI models, simulating clinical trials, and facilitating cross-border collaborations in rare disease research. We examine case studies where synthetic data successfully replicated patient characteristics, and supported predictive modelling and ensured compliance with regulations like GDPR and HIPAA. While acknowledging current limitations, we discuss synthetic data's potential to revolutionise rare disease research by enhancing data availability and privacy file enabling more efficient and effective research efforts in diagnosing, treating, and managing rare diseases globally.

Research topics

  • Privacy-Preserving Technologies in Data
  • Ethics in Clinical Research
  • Artificial Intelligence in Healthcare and Education

Read the original research

This page summarises published work. The authoritative version sits with the publisher.

DOI: 10.3389/fdgth.2025.1563991

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