FLYgene::Advancing Sustainable Breeding Programs and Genomic Tools for Black Soldier Fly (Hermetia illucens) in Kenya and Uganda

Abstract

The FLYgene project is aimed at advancing our knowledge of Black Soldier Fly (BSF) genetics, genomics, and phenomics, with a primary objective of implementing sustainable breeding programs in Kenya and Uganda.<br/>This project is designed to achieve multifaceted goals, including identification and prioritization of BSF traits in smallholder and commercial production systems, development of large-scale phenotyping systems, and design breeding programs tailored to production systems. FLYgene develops genomic tools for marker-based monitoring of genetic diversity and pedigree tracing, facilitating tracking of BSF lineage. FLygene has achieved notable milestones, conducting extensive surveys to characterize BSF production systems and trait preferences in Kenya and Uganda. Computer-vision-based approaches have been prototyped for precise phenotyping of BSF larval traits. Whole genome sequence data from ~300 BSF, sourced from wild and captive environments, provide insights into the genetic diversity. Protocols have been developed for the pilot implementation of mass selection at private-sector entities to drive innovation in BSF breeding practices. FLYgene, funded by the Ministry of Foreign Affairs (Danida), Denmark, is characterized by a strategic and impactful collaboration between multidisciplinary researcher teams and private-sector partners. Encompassing five PhDs, FLYgene is ensuring long-term capacity building.