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Design, 3D-QSAR, molecular docking, ADMET, molecular dynamics and MM-PBSA simulations for new anti-breast cancer agents

202438 citationsOpen accessUniversité Moulay Ismail de Meknes

In plain language

This study addressed the urgent need for new anti-breast cancer drugs due to resistance and side effects of current treatments. Researchers designed 23 novel compounds based on 1,4-quinone and quinoline derivatives. They employed integrated computational techniques, including 3D-QSAR, molecular docking, and molecular dynamics simulations, to evaluate these candidates. The 3D-QSAR models identified key molecular features influencing anti-breast cancer activity. ADMET properties were assessed, and molecular dynamics confirmed binding stability to aromatase. Ultimately, one compound, ligand 5, was identified as the most promising drug candidate for subsequent experimental testing.

Key takeaways

  • Breast cancer treatment faces challenges due to resistance and side effects, necessitating new drug development.
  • Computational methods, including 3D-QSAR, molecular docking, and molecular dynamics, were used to design and evaluate 23 new compounds.
  • The best 3D-QSAR model indicated that electrostatic, steric, and hydrogen bond acceptor fields are crucial for anti-breast cancer activity.
  • ADMET properties and molecular dynamics simulations helped confirm the stability and drug-likeness of the designed compounds.
  • One specific compound, ligand 5, was identified as a promising candidate for further experimental testing against breast cancer.

Why it matters

Breast cancer remains a significant health challenge, with existing treatments often facing resistance or causing adverse effects. This research offers a computational approach to discover new potential drug candidates. Identifying novel compounds could lead to more effective therapies with fewer side effects, ultimately improving patient outcomes and quality of life.

Commercialisation angle

This early-stage research identifies a promising compound (ligand 5) for potential development into a new anti-breast cancer drug. Pharmaceutical companies and drug developers could use these findings as a starting point for further in vitro and in vivo experimental testing, aiming to create novel therapeutic agents that address current treatment limitations.

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Abstract

Breast cancer is the most frequent form of malignant tumor in women, and represents a major public health problem due to its high mortality rate. Although a multitude of therapeutic options exist for control of this disease, the emergence of resistance to current pharmaceutical treatments underscores the urgency of developing new anti- breast cancer drugs, with a focus on reducing the adverse effects associated with current therapeutic agents. The present study concerns a new series of (23) compounds based on 1,4-quinone and quinoline derivatives to design candidate drugs against breast cancer. For this purpose, integrated computational techniques were applied, including 3D-QSAR, molecular docking and molecular dynamics simulations (MD). CoMFA and CoMSIA were used to build a robust and highly reliable 3D-QSAR models. To validate the model's predictive capabilities, an external validation was carried out. The results of the best model (CoMSIA/SEA) revealed that electrostatic, steric and hydrogen bond acceptor fields had a significant effect on the anti-breast cancer activity of molecules studied. In addition, evaluation of ADMET properties determined whether these newly designed ligands were likely to be selected as drug-candidates. To confirm the binding stability of the selected ligands to aromatase (3S7S) and validate the molecular docking results, molecular dynamics simulations lasting 100 nanoseconds were performed by calculating RMSD, RMSF, RoG, H-bond, SASA and MM-PBSA parameters. As a result, only one designed compound (ligand 5) emerged as the most promising drug candidate for experimental in vitro and in vivo testing, due to its potential inhibition of breast cancer.

Research topics

  • Computational Drug Discovery Methods
  • Synthesis and biological activity
  • Bioactive Compounds and Antitumor Agents

Sustainable Development Goals

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DOI: 10.1016/j.chphi.2023.100455

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