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article · Journal of Receptors and Signal Transduction

Computational exploration of phycobiliproteins-derived peptides: in-silico gastrointestinal digestion and multi-target molecular docking against Alzheimer’s disease-related enzymes

In plain language

Phycobiliproteins are dietary proteins that can serve as precursors to neuroprotective compounds aimed at multi-target management of Alzheimer's disease. Following simulated digestion in the gastrointestinal tract, three peptide fractions, designated P1, P2, and P3, were evaluated alongside phycocyanobilin through molecular docking simulations. The assessments examined interactions with key enzymes linked to neurodegeneration, including Beta-secretase 1, Glycogen synthase kinase 3 beta, Acetylcholinesterase, and Butyrylcholinesterase. Phycocyanobilin demonstrated strong binding affinities to Butyrylcholinesterase and Glycogen synthase kinase 3 beta, pointing to potential roles in addressing tau-related and late-stage cholinergic pathways. Meanwhile, peptide P2 showed notable affinity for Acetylcholinesterase and Beta-secretase 1, indicating potential influence over amyloidogenic and early cholinergic mechanisms. The peptides P1 and P3 offered complementary moderate activity across these targets, indicating that phycobiliproteins warrant deeper exploration as sources of bioactive compounds.

Key takeaways

  • Simulated gastrointestinal digestion of phycobiliproteins yielded three distinct peptide fractions alongside phycocyanobilin.
  • Phycocyanobilin demonstrated high binding affinity to Butyrylcholinesterase and Glycogen synthase kinase 3 beta.
  • Peptide P2 bound strongly to Acetylcholinesterase and Beta-secretase 1, showing potential action on amyloid and cholinergic pathways.
  • Peptides P1 and P3 displayed complementary moderate binding against key Alzheimer's disease target enzymes.

Why it matters

Alzheimer's disease involves several biological pathways, including protein accumulation and enzyme imbalances, making single-target treatments difficult. Identifying food-derived proteins that release diverse active peptides during digestion could help create preventive dietary strategies. This computational research highlights specific protein fragments that may simultaneously target multiple enzymes involved in cognitive decline.

Commercialisation angle

This research could eventually inform the development of functional foods and nutraceutical products designed to support brain health. Potential users include food ingredient manufacturers and nutraceutical developers targeting cognitive health formulations. However, because the findings rely entirely on simulated digestion and computational molecular docking, the research represents an early discovery phase that requires experimental validation and clinical testing before commercial use is possible.

AI-generated from the published abstract. Always read the original work before citing.

Abstract

Alzheimer's disease (AD) is a multifactorial neurodegenerative disorder characterized by amyloid-β (Aβ) accumulation, Tau hyperphosphorylation, and cholinergic dysfunction, necessitating multi-target therapeutic strategies. This study evaluated phycobiliproteins (PBPs) as dietary precursors of neuroprotective compounds acting on multiple AD pathways. After simulated gastrointestinal digestion, peptide fractions P1 (GCAPR), P2 (QAGDQL), and P3 (AGDASVL) were assessed alongside phycocyanobilin (PCB) using molecular docking against Beta-secretase 1, Glycogen synthase kinase 3 beta, Acetylcholinesterase, and Butyrylcholinesterase. PCB showed strong affinities toward BChE (-10.0 kcal/mol) and GSK-3β (-8.4 kcal/mol), suggesting modulation of tauopathic and late-stage cholinergic pathways. P2 exhibited notable binding to AChE (-8.8 kcal/mol) and BACE1 (-7.6 kcal/mol), indicating effects on amyloidogenic and early cholinergic mechanisms, while P1 and P3 provided complementary moderate activity. Overall, these findings support further investigation of PBPs as potential sources of bioactive compounds for functional food and nutraceutical applications targeting AD-related pathways.

Research topics

  • Protein Hydrolysis and Bioactive Peptides
  • Biochemical and Structural Characterization
  • Advanced Proteomics Techniques and Applications

Sustainable Development Goals

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DOI: 10.1080/10799893.2026.2723004

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